Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_2290KEGG: rfr:Rfer_4021 hypothetical protein. (365 aa)    
Predicted Functional Partners:
Daci_2291
KEGG: hch:HCH_06792 hypothetical protein.
 
     0.660
Daci_2289
Putative transcriptional regulator, ArsR family; SMART: regulatory protein ArsR; KEGG: ajs:Ajs_2514 regulatory protein, ArsR.
       0.548
Daci_2287
TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: bbr:BB2781 putative NADPH-dependent FMN reductase.
       0.499
Daci_2288
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: bbr:BB2782 arsenate reductase.
       0.499
Daci_2292
Hypothetical protein.
       0.442
Daci_4572
PFAM: outer membrane efflux protein; KEGG: prw:PsycPRwf_0654 outer membrane efflux protein.
  
     0.435
Daci_0541
KEGG: aav:Aave_4488 hypothetical protein.
  
     0.429
Daci_4219
KEGG: sma:SAV3034 hypothetical protein.
  
     0.412
Daci_0690
KEGG: aav:Aave_0425 hypothetical protein.
 
     0.410
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
   
    0.410
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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