STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2291KEGG: hch:HCH_06792 hypothetical protein. (310 aa)    
Predicted Functional Partners:
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
 
    0.770
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.665
Daci_2290
KEGG: rfr:Rfer_4021 hypothetical protein.
 
     0.660
Daci_2221
KEGG: pap:PSPA7_1712 hypothetical protein.
  
     0.627
Daci_2439
KEGG: aav:Aave_2213 hypothetical protein.
  
     0.605
Daci_2292
Hypothetical protein.
       0.598
Daci_3681
KEGG: esa:ESA_01915 hypothetical protein.
  
     0.594
Daci_4633
KEGG: pna:Pnap_1480 NAD-dependent epimerase/dehydratase.
  
     0.583
Daci_0285
KEGG: ppf:Pput_3076 hypothetical protein.
  
     0.538
Daci_5808
KEGG: reu:Reut_A1068 putative ABC transporter permease protein.
  
     0.530
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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