STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2304Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pau:PA14_31160 hypothetical protein. (131 aa)    
Predicted Functional Partners:
Daci_2305
Hypothetical protein.
       0.558
Daci_4211
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; KEGG: xfa:XF1719 hypothetical protein.
  
     0.512
Daci_0459
KEGG: ajs:Ajs_2651 hypothetical protein.
 
     0.469
Daci_2727
KEGG: rme:Rmet_3026 hypothetical protein.
 
     0.469
Daci_2689
KEGG: aav:Aave_0736 hypothetical protein.
  
     0.412
Daci_2703
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1278 transcriptional regulator, LysR family.
  
     0.411
Daci_4178
KEGG: har:HEAR2019 conserved hypothetical protein; putative signal peptide.
  
     0.410
Daci_4179
KEGG: ajs:Ajs_1256 hypothetical protein.
 
     0.409
Daci_4177
KEGG: rme:Rmet_2351 putative secreted protein.
  
     0.405
Daci_0282
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bam:Bamb_4540 HipA domain protein.
   
 
 0.403
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.