STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2322PFAM: protein of unknown function DUF615; KEGG: aav:Aave_2078 protein of unknown function DUF615; Belongs to the UPF0307 family. (225 aa)    
Predicted Functional Partners:
Daci_2321
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: ajs:Ajs_1051 molybdenum cofactor synthesis domain.
       0.820
Daci_5026
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
    
 
 0.765
rpmG
PFAM: ribosomal protein L33; KEGG: aav:Aave_3429 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.752
Daci_2323
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ajs:Ajs_1053 peptidase U62, modulator of DNA gyrase.
  
    0.651
Daci_5460
PFAM: import inner membrane translocase subunit Tim44; KEGG: ajs:Ajs_0868 import inner membrane translocase, subunit Tim44.
  
     0.618
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
 
 
 0.612
rplD
Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
  
 
   0.607
rpmC
PFAM: ribosomal protein L29; KEGG: aav:Aave_0346 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
   0.561
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: aav:Aave_1181 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
   0.561
Daci_4927
PFAM: protein of unknown function UPF0044; KEGG: ajs:Ajs_2385 protein of unknown function UPF0044.
 
   
 0.556
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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