STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2335KEGG: saz:Sama_0272 hypothetical protein. (554 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.829
bamD
Putative transmembrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.761
Daci_1979
KEGG: pna:Pnap_3593 hypothetical protein.
  
   
 0.737
Daci_5090
PFAM: NlpBDapX family lipoprotein; KEGG: ajs:Ajs_1009 NlpBDapX family lipoprotein.
   
 
 0.648
Daci_1975
KEGG: pna:Pnap_3592 hypothetical protein.
  
    0.632
Daci_5017
KEGG: aav:Aave_1426 hypothetical protein.
  
  
 0.533
Daci_2336
PFAM: regulatory protein LuxR; KEGG: rpb:RPB_1819 transcriptional regulator, LuxR family.
  
    0.519
Daci_0539
PFAM: YiaAB two helix domain protein; KEGG: aav:Aave_4490 YiaAB two helix domain protein.
  
     0.478
Daci_2337
PFAM: regulatory protein TetR; KEGG: tbd:Tbd_1984 possible transcriptional regulator, TetR family.
 
   
 0.474
Daci_2334
TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: psa:PST_2727 phenazine biosynthesis protein, PhzF family.
       0.470
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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