Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2341KEGG: bbr:BB3605 putative iron uptake protein. (108 aa)    
Predicted Functional Partners:
Daci_2342
KEGG: bbr:BB4741 putative iron-regulated membrane protein.
  
    0.803
Daci_2343
KEGG: bbr:BB4740 hypothetical protein.
       0.773
Daci_3281
KEGG: neu:NE1083 hypothetical protein.
  
    0.604
Daci_0271
KEGG: pfo:Pfl_0928 hypothetical protein.
  
    0.585
Daci_4546
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pna:Pnap_2042 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
   
    0.460
Daci_2340
PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_1054 protein of unknown function DUF6, transmembrane.
       0.424
Daci_2344
TIGRFAM: extracellular repeat protein, HAF family; KEGG: fra:Francci3_4152 hypothetical protein.
       0.416
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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