Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2343KEGG: bbr:BB4740 hypothetical protein. (110 aa)    
Predicted Functional Partners:
Daci_2341
KEGG: bbr:BB3605 putative iron uptake protein.
       0.773
Daci_2342
KEGG: bbr:BB4741 putative iron-regulated membrane protein.
       0.773
Daci_2340
PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_1054 protein of unknown function DUF6, transmembrane.
       0.424
Daci_2344
TIGRFAM: extracellular repeat protein, HAF family; KEGG: fra:Francci3_4152 hypothetical protein.
       0.416
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.