STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2353PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: ccr:CC_3525 ferredoxin reductase. (411 aa)    
Predicted Functional Partners:
Daci_2352
PFAM: ferredoxin; KEGG: pla:Plav_2520 ferredoxin.
 
 
 0.967
Daci_2370
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ajs:Ajs_2841 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 0.823
Daci_2354
KEGG: mms:mma_1224 hypothetical protein.
       0.773
Daci_3994
TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: ajs:Ajs_2139 ferredoxin, 2Fe-2S type, ISC system.
  
 
 0.692
Daci_2499
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: rme:Rmet_2155 cytochrome c, class I.
   
 
 0.675
Daci_0687
PFAM: ferredoxin; cytochrome P450; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5278 ferredoxin:cytochrome P450:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region.
  
 
 0.674
Daci_2003
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: azo:azo1176 nitrite reductase small subunit, probable.
 
 0.669
Daci_0445
PFAM: copper resistance protein CopC; KEGG: rme:Rmet_6114 copper resistance protein CopC.
    
   0.632
Daci_4909
PFAM: ribosomal protein L31; KEGG: ajs:Ajs_2363 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
   
    0.610
Daci_5723
TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: bpe:BP2874 riboflavin synthase alpha chain.
   
    0.610
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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