Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2383TIGRFAM: lytic murein transglycosylase B; KEGG: ajs:Ajs_2817 lytic murein transglycosylase B. (392 aa)    
Predicted Functional Partners:
Daci_2384
PFAM: transglutaminase domain protein; KEGG: ajs:Ajs_2816 transglutaminase domain protein.
       0.853
Daci_2385
PFAM: protein of unknown function DUF58; KEGG: ajs:Ajs_2815 protein of unknown function DUF58.
       0.853
Daci_2386
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ajs:Ajs_2814 ATPase associated with various cellular activities, AAA_3.
       0.853
Daci_2387
PFAM: histone deacetylase superfamily; KEGG: aav:Aave_2164 histone deacetylase superfamily.
       0.717
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.543
Daci_2388
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2812 enoyl-CoA hydratase/isomerase.
       0.528
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
   
 0.523
Daci_4898
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic.
  
   
 0.513
Daci_4258
PFAM: AsmA family protein; KEGG: aav:Aave_2673 AsmA family protein.
  
    0.462
Daci_6036
PFAM: aminoglycoside phosphotransferase; KEGG: aav:Aave_4765 aminoglycoside phosphotransferase.
 
     0.454
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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