STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2385PFAM: protein of unknown function DUF58; KEGG: ajs:Ajs_2815 protein of unknown function DUF58. (344 aa)    
Predicted Functional Partners:
Daci_2384
PFAM: transglutaminase domain protein; KEGG: ajs:Ajs_2816 transglutaminase domain protein.
 
  
 0.979
Daci_2386
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ajs:Ajs_2814 ATPase associated with various cellular activities, AAA_3.
 
  
 0.953
Daci_2383
TIGRFAM: lytic murein transglycosylase B; KEGG: ajs:Ajs_2817 lytic murein transglycosylase B.
       0.853
Daci_0834
PFAM: Peptidoglycan-binding LysM; KEGG: aav:Aave_4687 peptidoglycan-binding LysM.
 
     0.773
Daci_5579
PFAM: Pilus assembly protein PilO; KEGG: aav:Aave_0998 pilus assembly protein, PilO.
 
     0.772
Daci_5578
PFAM: Pilus assembly protein PilP; KEGG: aav:Aave_0999 pilus assembly protein, PilQ.
 
     0.771
Daci_5580
PFAM: Fimbrial assembly family protein; KEGG: ajs:Ajs_0731 fimbrial assembly family protein.
 
     0.770
Daci_5240
KEGG: aav:Aave_1218 putative transmembrane protein.
 
    0.764
Daci_3390
PFAM: type IV pilus assembly PilZ; KEGG: aav:Aave_3410 type IV pilus assembly PilZ.
 
     0.761
Daci_5581
TIGRFAM: type IV pilus assembly protein PilM; KEGG: aav:Aave_0996 type IV pilus assembly protein PilM.
 
     0.760
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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