Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2396KEGG: mms:mma_2015 ATP-binding component of cytochrome-related transport system; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase. (561 aa)    
Predicted Functional Partners:
Daci_2395
KEGG: mms:mma_2016 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
0.999
Daci_2398
KEGG: har:HEAR1375 cytochrome d terminal oxidase, polypeptide subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.
 
  
 0.992
Daci_2397
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: oan:Oant_3541 cytochrome bd ubiquinol oxidase subunit I.
 
  
 0.987
Daci_2399
TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: har:HEAR1376 conserved hypothetical protein: putative YbgT protein of unknown function; putative signal peptide.
 
  
 0.919
Daci_2394
PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD.
       0.427
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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