Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Daci_2406PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2752 uncharacterized protein UPF0065. (324 aa)    
Predicted Functional Partners:
Daci_5393
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_1070 protein of unknown function DUF112, transmembrane.
 
    0.798
Daci_3049
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5627 protein of unknown function DUF112, transmembrane.
 
    0.665
Daci_2520
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 protein of unknown function DUF112, transmembrane.
 
    0.660
Daci_2405
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bbr:BB2683 putative racemase.
       0.655
Daci_5394
PFAM: protein of unknown function DUF1468; KEGG: aav:Aave_1069 protein of unknown function DUF1468.
 
    0.528
Daci_2404
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB2682 probable LysR-family transcriptional regulator.
       0.469
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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