STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2432KEGG: ajs:Ajs_2788 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Daci_2431
PFAM: HpcH/HpaI aldolase; KEGG: aav:Aave_2208 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.804
Daci_0382
PFAM: VanZ family protein; KEGG: ajs:Ajs_0269 VanZ family protein.
  
     0.767
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
  
     0.734
Daci_4869
KEGG: ajs:Ajs_1767 putative transmembrane protein.
  
     0.713
Daci_1123
KEGG: vei:Veis_0989 hypothetical protein.
  
     0.712
Daci_5001
KEGG: ajs:Ajs_1190 conserved hypothetical signal peptide protein.
  
     0.710
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
       0.701
Daci_4952
KEGG: aav:Aave_2989 hypothetical protein.
  
     0.697
tam
Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.
       0.682
Daci_2433
TIGRFAM: aconitate hydratase 2; PFAM: aconitate hydratase domain protein; Aconitase B, N-terminal; KEGG: aav:Aave_2210 aconitate hydratase; Belongs to the aconitase/IPM isomerase family.
       0.674
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.