Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2435PFAM: plasmid stabilization system; KEGG: xfa:XF2032 plasmid stabilization protein. (96 aa)    
Predicted Functional Partners:
Daci_2434
KEGG: xfa:XF2031 plasmid stabilization protein.
 
     0.950
Daci_5941
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.856
Daci_5834
KEGG: vei:Veis_2291 putative transcriptional regulators, CopG/Arc/MetJ family.
  
 
 0.855
Daci_5158
TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: mca:MCA2652 hypothetical protein.
  
 
 0.718
Daci_4839
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin.
   
   0.592
Daci_0439
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein.
  
 
 0.500
Daci_2700
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein.
  
 
 0.500
Daci_2433
TIGRFAM: aconitate hydratase 2; PFAM: aconitate hydratase domain protein; Aconitase B, N-terminal; KEGG: aav:Aave_2210 aconitate hydratase; Belongs to the aconitase/IPM isomerase family.
       0.477
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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