STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2439KEGG: aav:Aave_2213 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Daci_2438
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: aav:Aave_2212 transcriptional regulator, XRE family.
 
     0.865
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
  
     0.682
Daci_4823
KEGG: rfr:Rfer_1005 extracellular ligand-binding receptor.
  
     0.658
Daci_2291
KEGG: hch:HCH_06792 hypothetical protein.
  
     0.605
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.603
Daci_0558
KEGG: dno:DNO_0148 hypothetical protein.
  
     0.547
Daci_0994
KEGG: bur:Bcep18194_A5272 hypothetical protein.
  
     0.489
Daci_4633
KEGG: pna:Pnap_1480 NAD-dependent epimerase/dehydratase.
  
     0.477
Daci_1373
PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B3706 beta-lactamase-like.
  
     0.473
Daci_0967
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_3970 major facilitator superfamily MFS_1.
  
     0.472
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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