Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2453TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: reh:H16_B2570 outer membrane receptor for Fe(III)-dicitrate. (720 aa)    
Predicted Functional Partners:
Daci_1450
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor.
 
 
 0.694
Daci_4746
KEGG: aav:Aave_3724 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
  
   
 0.614
Daci_3326
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ppf:Pput_0896 anti-FecI sigma factor, FecR.
 
 
 0.607
Daci_5620
KEGG: reh:H16_B1869 cytochrome c, mono-and diheme variants.
 
     0.594
Daci_1373
PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B3706 beta-lactamase-like.
  
     0.544
Daci_4751
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor.
 
 
 0.541
Daci_3657
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vei:Veis_4740 TonB-dependent siderophore receptor.
  
   
 0.507
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
  
     0.505
Daci_5894
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE0979 putative transmembrane sensor.
 
 
 0.500
Daci_3275
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_3492 Fe2+-dicitrate sensor, membrane component.
 
 
 0.498
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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