STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2455KEGG: ajs:Ajs_2784 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Daci_4952
KEGG: aav:Aave_2989 hypothetical protein.
  
     0.682
Daci_2034
KEGG: vei:Veis_4154 hypothetical protein.
  
     0.681
Daci_2454
Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: reu:Reut_B3939 regulatory protein GntR, HTH:aminotransferase, class I and II.
       0.671
Daci_4736
PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2488 major facilitator superfamily MFS_1.
  
     0.642
Daci_1623
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: eba:ebA803 putative helicase.
  
    0.633
Daci_3227
KEGG: mms:mma_2189 hypothetical protein.
  
    0.632
Daci_0875
PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family.
  
     0.611
Daci_1483
TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein.
  
     0.587
Daci_0023
KEGG: ajs:Ajs_0007 hypothetical protein.
  
     0.558
Daci_3780
PFAM: integrase family protein; KEGG: rfr:Rfer_2261 phage integrase; Belongs to the 'phage' integrase family.
  
     0.542
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.