Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_2480PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aav:Aave_2285 major facilitator superfamily MFS_1. (457 aa)    
Predicted Functional Partners:
Daci_3152
PFAM: transport system permease protein; KEGG: pfl:PFL_3625 ferric vibriobactin ABC transporter, permease protein VC0778; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.618
Daci_2481
Hypothetical protein.
       0.548
Daci_3150
PFAM: periplasmic binding protein; KEGG: pfl:PFL_3623 ferric enterobactin (enterochelin) tranporter.
   
  
 0.425
Daci_4786
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: acb:A1S_3339 putative ferric siderophore receptor protein.
  
    0.411
Daci_1173
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0794 TonB-dependent siderophore receptor.
  
    0.402
Daci_1004
PFAM: putative esterase; KEGG: bur:Bcep18194_A5450 putative esterase.
   
  
 0.400
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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