STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2483PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN3175 hypothetical protein. (280 aa)    
Predicted Functional Partners:
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   
   0.813
macB-2
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   
   0.813
Daci_4998
KEGG: ajs:Ajs_1193 hypothetical protein.
  
 
   0.736
Daci_5146
KEGG: ajs:Ajs_3300 hypothetical protein.
  
     0.611
Daci_2034
KEGG: vei:Veis_4154 hypothetical protein.
  
     0.538
Daci_2455
KEGG: ajs:Ajs_2784 hypothetical protein.
  
     0.513
Daci_3154
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sgl:SG0777 hypothetical protein.
  
     0.451
Daci_2922
PAS/PAC sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: ajs:Ajs_0010 multi-sensor hybrid histidine kinase.
 
     0.449
Daci_3119
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: rca:Rcas_0471 conserved repeat domain.
  
     0.442
Daci_3781
KEGG: rfr:Rfer_2260 hypothetical protein.
  
     0.427
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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