STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2486KEGG: aav:Aave_1201 hypothetical protein. (755 aa)    
Predicted Functional Partners:
Daci_2485
PFAM: peptidase M23B; KEGG: ajs:Ajs_2496 peptidase M23B.
  
  
 0.705
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
  
     0.497
Daci_2496
KEGG: ajs:Ajs_1615 hypothetical protein.
 
     0.487
Daci_2487
KEGG: aav:Aave_2295 hypothetical protein.
       0.468
Daci_0967
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_3970 major facilitator superfamily MFS_1.
  
     0.463
Daci_3681
KEGG: esa:ESA_01915 hypothetical protein.
  
   
 0.456
Daci_3913
TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: oan:Oant_3482 YidE/YbjL duplication.
  
    0.455
Daci_2221
KEGG: pap:PSPA7_1712 hypothetical protein.
  
     0.430
Daci_0285
KEGG: ppf:Pput_3076 hypothetical protein.
  
     0.405
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.