STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2492PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_2303 alpha/beta hydrolase fold. (295 aa)    
Predicted Functional Partners:
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.779
Daci_2493
PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor.
       0.779
Daci_2494
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
     
 0.560
Daci_2490
KEGG: ajs:Ajs_1609 hypothetical protein.
  
    0.497
Daci_2495
PFAM: phospholipase/Carboxylesterase; KEGG: ajs:Ajs_1614 phospholipase/carboxylesterase.
  
 0.488
Daci_5204
PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_3194 GCN5-related N-acetyltransferase.
  
     0.483
Daci_0591
PFAM: Phosphoglycerate mutase; KEGG: aav:Aave_4443 phosphoglycerate mutase.
  
 
   0.453
Daci_2901
KEGG: aav:Aave_1797 peptidase M14, carboxypeptidase A.
 
 
   0.449
Daci_0875
PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family.
  
     0.428
Daci_0089
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_4039 acyl-CoA dehydrogenase domain protein.
 
   0.421
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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