STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2494PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B. (312 aa)    
Predicted Functional Partners:
Daci_0908
PFAM: Pirin domain protein; KEGG: ajs:Ajs_3965 pirin domain protein domain protein; Belongs to the pirin family.
 
  
 0.668
Daci_0919
PFAM: Pirin domain protein; KEGG: csa:Csal_1778 pirin-like protein; Belongs to the pirin family.
 
  
 0.666
Daci_1559
PFAM: Pirin domain protein; KEGG: cvi:CV_1283 hypothetical protein; Belongs to the pirin family.
 
  
 0.662
Daci_4046
PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: ajs:Ajs_1985 pirin domain protein domain protein; Belongs to the pirin family.
 
  
 0.649
Daci_3946
PFAM: Pirin domain protein; KEGG: bte:BTH_I1747 pirin family protein; Belongs to the pirin family.
 
  
 0.624
Daci_2495
PFAM: phospholipase/Carboxylesterase; KEGG: ajs:Ajs_1614 phospholipase/carboxylesterase.
       0.618
Daci_2493
PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor.
       0.591
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.572
Daci_2492
PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_2303 alpha/beta hydrolase fold.
     
 0.560
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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