STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2500PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2125 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Daci_2501
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_3495 transcriptional regulator, LysR family.
 
     0.656
Daci_4991
KEGG: reh:H16_B0479 hypothetical protein.
  
     0.538
Daci_2458
PFAM: protein of unknown function DUF81; KEGG: bbr:BB1250 putative membrane protein.
 
     0.485
Daci_5330
KEGG: mms:mma_3481 hypothetical protein.
  
     0.485
Daci_4520
KEGG: bpa:BPP0555 hypothetical protein.
 
     0.462
Daci_3674
PFAM: Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0177 cupin 2, conserved barrel domain protein.
  
     0.445
Daci_0273
KEGG: rpc:RPC_2857 hypothetical protein.
  
     0.436
Daci_2449
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: aav:Aave_1527 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
    0.422
Daci_2779
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ajs:Ajs_1088 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
    0.422
Daci_3884
KEGG: rpb:RPB_3526 hypothetical protein.
  
     0.412
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.