Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2531KEGG: xac:XAC4279 hypothetical protein. (392 aa)    
Predicted Functional Partners:
Daci_4844
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: pna:Pnap_3742 VWA containing CoxE family protein.
  
     0.532
Daci_2530
Putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bch:Bcen2424_5529 sigma54 specific transcriptional regulator, fis family.
       0.515
Daci_4846
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: pna:Pnap_3739 ATPase associated with various cellular activities, AAA_5.
  
     0.499
Daci_4845
KEGG: pna:Pnap_3740 hypothetical protein.
  
     0.482
Daci_1286
KEGG: aba:Acid345_4150 hypothetical protein.
  
     0.474
Daci_5249
KEGG: rba:RB9964 hypothetical protein-transmembrane prediction.
  
     0.473
Daci_5759
KEGG: bbt:BBta_5115 hypothetical protein.
  
     0.473
Daci_5758
PFAM: band 7 protein; KEGG: bbt:BBta_5114 hypothetical protein.
  
     0.467
Daci_4848
PFAM: zinc finger SWIM domain protein; KEGG: pna:Pnap_3737 zinc finger, SWIM domain protein.
  
     0.461
Daci_0679
KEGG: bam:Bamb_5431 nucleotidyltransferase-like protein.
  
     0.415
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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