Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_2544PFAM: porin Gram-negative type; KEGG: vei:Veis_0301 porin, gram-negative type. (367 aa)    
Predicted Functional Partners:
Daci_4870
KEGG: ajs:Ajs_1766 putative transmembrane protein.
  
     0.716
Daci_2556
KEGG: pol:Bpro_4732 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane.
 
     0.700
Daci_0832
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
   
 0.676
Daci_2904
KEGG: aav:Aave_1802 hypothetical protein.
  
     0.674
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
     0.661
Daci_4929
KEGG: ajs:Ajs_2388 hypothetical protein.
  
     0.638
Daci_3940
PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_2055 OmpA/MotB domain protein.
  
 
 0.622
Daci_0368
KEGG: ajs:Ajs_0253 putative lipoprotein.
  
     0.614
Daci_5328
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.611
Daci_0881
PFAM: Sporulation domain protein; KEGG: aav:Aave_4630 sporulation domain protein.
  
     0.572
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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