Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2555PFAM: inner-membrane translocator; KEGG: vei:Veis_0326 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (355 aa)    
Predicted Functional Partners:
Daci_2554
PFAM: inner-membrane translocator; KEGG: vei:Veis_0328 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
0.988
Daci_2552
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0330 ABC transporter related.
  
 0.966
Daci_2551
PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_0332 extracellular ligand-binding receptor.
 
    0.965
Daci_2553
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0329 ABC transporter related.
 
  
 0.959
Daci_3309
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1680 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.877
Daci_3311
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1682 ABC transporter related.
  
 0.815
Daci_4487
PFAM: inner-membrane translocator; KEGG: bbr:BB4421 probable branched-chain amino acid transport system, permease component.
  
 0.780
Daci_4820
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1003 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.776
Daci_6024
PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B2565 ABC branched chain amino acid family transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
  
 0.772
Daci_3312
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2930 ABC transporter-related protein.
 
  
 0.763
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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