Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2557PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1646 alpha/beta hydrolase fold. (302 aa)    
Predicted Functional Partners:
Daci_2556
KEGG: pol:Bpro_4732 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane.
     
 0.611
Daci_2555
PFAM: inner-membrane translocator; KEGG: vei:Veis_0326 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.559
Daci_2551
PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_0332 extracellular ligand-binding receptor.
 
     0.556
Daci_2552
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0330 ABC transporter related.
 
     0.540
Daci_2554
PFAM: inner-membrane translocator; KEGG: vei:Veis_0328 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.537
Daci_2558
PFAM: Rhodanese domain protein; KEGG: ajs:Ajs_1647 rhodanese domain protein.
  
  
 0.537
Daci_2553
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0329 ABC transporter related.
 
     0.526
Daci_4883
KEGG: ajs:Ajs_1755 hypothetical protein.
  
     0.518
Daci_2393
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2808 acyl-CoA dehydrogenase domain protein.
  
  0.429
apaH
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.427
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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