Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2571TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: ajs:Ajs_1201 amine oxidase. (462 aa)    
Predicted Functional Partners:
Daci_2572
TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: ajs:Ajs_1202 squalene/phytoene synthase.
 
    0.965
Daci_2573
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: ajs:Ajs_1205 squalene/phytoene synthase.
 
  
 0.929
Daci_1116
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: aav:Aave_0669 hemerythrin HHE cation binding domain protein.
  
     0.677
Daci_1458
KEGG: vei:Veis_4558 hypothetical protein.
  
     0.621
Daci_3007
KEGG: ajs:Ajs_2549 hypothetical protein.
  
     0.605
Daci_1347
PFAM: protein of unknown function DUF583; KEGG: ajs:Ajs_0600 protein of unknown function DUF583.
  
     0.589
Daci_5262
KEGG: aav:Aave_1195 putative transmembrane protein.
  
     0.541
Daci_1497
TIGRFAM: MJ0042 family finger-like protein; KEGG: aav:Aave_0860 MJ0042 family finger-like protein.
  
     0.527
Daci_2570
PFAM: conserved hypothetical protein; KEGG: aav:Aave_3271 uncharacterized protein UPF0065.
       0.500
Daci_2230
PFAM: protein of unknown function DUF513 hemX; KEGG: vei:Veis_1038 protein of unknown function DUF513, HemX.
  
     0.491
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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