Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Daci_2590PFAM: tail E family protein; KEGG: rso:RSc1916 probable phage-related protein. (119 aa)    
Predicted Functional Partners:
Daci_2587
PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein.
 
    0.965
Daci_2604
PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein.
 
    0.933
Daci_2621
PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein.
 
    0.933
Daci_2638
PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein.
 
    0.933
Daci_2591
TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pna:Pnap_3309 phage major tail tube protein.
 
    0.931
Daci_2586
PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein.
 
    0.925
Daci_2588
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pna:Pnap_3313 phage tail tape measure protein, TP901 family.
 
    0.924
Daci_2608
PFAM: tail X family protein; KEGG: spt:SPA2577 putative phage tail protein.
 
    0.920
Daci_2642
PFAM: tail X family protein; KEGG: spt:SPA2577 putative phage tail protein.
 
    0.920
Daci_2592
PFAM: tail sheath protein; KEGG: pna:Pnap_3308 phage tail sheath protein.
 
    0.913
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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