STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2610PFAM: integrase family protein; KEGG: bbr:BB2185 integrase. (338 aa)    
Predicted Functional Partners:
Daci_2611
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rso:RSc1447 putative transcription regulator protein.
  
  
 0.517
Daci_2612
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: pol:Bpro_0337 HipA-like.
       0.503
Daci_1820
KEGG: bpd:BURPS668_A1895 hypothetical protein.
  
     0.494
Daci_1671
KEGG: ajs:Ajs_3540 ComF family protein.
   
    0.454
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.443
Daci_4722
PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; Ketopantoate reductase ApbA/PanE domain protein; KEGG: aav:Aave_3283 prephenate dehydrogenase.
  
    0.419
Daci_1909
PFAM: integrase family protein; KEGG: pna:Pnap_2283 phage integrase family protein.
  
     0.405
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.