STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2612TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: pol:Bpro_0337 HipA-like. (435 aa)    
Predicted Functional Partners:
Daci_2611
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rso:RSc1447 putative transcription regulator protein.
 
 
 0.941
Daci_2577
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rso:RSc1447 putative transcription regulator protein.
 
 
 0.750
Daci_0283
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bam:Bamb_4541 transcriptional regulator, XRE family.
 
 
 0.678
Daci_2610
PFAM: integrase family protein; KEGG: bbr:BB2185 integrase.
       0.503
Daci_2825
PFAM: protein of unknown function DUF1016; KEGG: bur:Bcep18194_B0261 protein of unknown function DUF1016.
  
     0.442
Daci_1539
PFAM: protein of unknown function DUF1016; KEGG: gur:Gura_1011 protein of unknown function DUF1016.
  
     0.410
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
   
 0.410
Daci_0461
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_1481 transcriptional regulator, XRE family.
   
 
 0.403
Daci_2304
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pau:PA14_31160 hypothetical protein.
   
 
 0.403
Daci_3732
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pau:PA14_11150 putative transcriptional regulator.
   
 
 0.403
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.