Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2612TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: pol:Bpro_0337 HipA-like. (435 aa)    
Predicted Functional Partners:
Daci_2611
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rso:RSc1447 putative transcription regulator protein.
 
  
 0.917
Daci_2577
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rso:RSc1447 putative transcription regulator protein.
 
  
 0.652
Daci_0283
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bam:Bamb_4541 transcriptional regulator, XRE family.
 
  
 0.550
Daci_2610
PFAM: integrase family protein; KEGG: bbr:BB2185 integrase.
       0.503
Daci_2825
PFAM: protein of unknown function DUF1016; KEGG: bur:Bcep18194_B0261 protein of unknown function DUF1016.
  
     0.442
Daci_1539
PFAM: protein of unknown function DUF1016; KEGG: gur:Gura_1011 protein of unknown function DUF1016.
  
     0.410
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
   
 0.409
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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