Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2619Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: pna:Pnap_3316 putative transcriptional regulator, XRE family. (110 aa)    
Predicted Functional Partners:
Daci_2590
PFAM: tail E family protein; KEGG: rso:RSc1916 probable phage-related protein.
  
     0.720
Daci_2624
PFAM: tail E family protein; KEGG: rso:RSc1916 probable phage-related protein.
  
     0.720
Daci_2588
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pna:Pnap_3313 phage tail tape measure protein, TP901 family.
  
     0.716
Daci_2622
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pna:Pnap_3313 phage tail tape measure protein, TP901 family.
  
     0.716
Daci_2586
PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein.
  
   
 0.706
Daci_2620
PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein.
  
   
 0.706
Daci_2592
PFAM: tail sheath protein; KEGG: pna:Pnap_3308 phage tail sheath protein.
  
     0.696
Daci_2626
PFAM: tail sheath protein; KEGG: pna:Pnap_3308 phage tail sheath protein.
  
     0.696
Daci_2591
TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pna:Pnap_3309 phage major tail tube protein.
  
     0.695
Daci_2625
TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pna:Pnap_3309 phage major tail tube protein.
  
     0.695
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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