Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2626PFAM: tail sheath protein; KEGG: pna:Pnap_3308 phage tail sheath protein. (397 aa)    
Predicted Functional Partners:
Daci_2625
TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pna:Pnap_3309 phage major tail tube protein.
 
 
 0.974
Daci_2620
PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein.
 
 
 0.973
Daci_2602
PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25.
 
 
 0.964
Daci_2636
PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25.
 
 
 0.964
Daci_2586
PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein.
 
 
 0.963
Daci_2621
PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein.
 
 
 0.951
Daci_2591
TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pna:Pnap_3309 phage major tail tube protein.
 
 
 0.941
Daci_2587
PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein.
 
 
 0.933
Daci_2601
PFAM: Baseplate J family protein; KEGG: yps:YPTB1749 probable bacteriophage protein.
 
 
 0.933
Daci_2635
PFAM: Baseplate J family protein; KEGG: yps:YPTB1749 probable bacteriophage protein.
 
 
 0.933
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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