STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2638PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein. (169 aa)    
Predicted Functional Partners:
Daci_2642
PFAM: tail X family protein; KEGG: spt:SPA2577 putative phage tail protein.
 
    0.981
Daci_2635
PFAM: Baseplate J family protein; KEGG: yps:YPTB1749 probable bacteriophage protein.
 
    0.965
Daci_2636
PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25.
 
    0.965
Daci_2637
TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: stm:STM2710 phage baseplate assembly-like protein.
 
    0.965
Daci_2590
PFAM: tail E family protein; KEGG: rso:RSc1916 probable phage-related protein.
 
    0.925
Daci_2624
PFAM: tail E family protein; KEGG: rso:RSc1916 probable phage-related protein.
 
    0.925
Daci_2587
PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein.
 
    0.924
Daci_2621
PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein.
 
    0.924
Daci_2608
PFAM: tail X family protein; KEGG: spt:SPA2577 putative phage tail protein.
 
    0.921
Daci_2640
KEGG: aav:Aave_2903 prophage LambdaSo, lysozyme, putative.
 
    0.889
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.