Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_2658PFAM: regulatory protein MarR; KEGG: xau:Xaut_1307 transcriptional regulator, MarR family. (169 aa)    
Predicted Functional Partners:
Daci_2657
PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3135 drug resistance transporter, Bcr/CflA subfamily.
     
 0.775
Daci_5715
KEGG: xau:Xaut_1306 fusaric acid resistance protein conserved region.
 
   
 0.674
Daci_2656
PFAM: putative esterase; KEGG: bte:BTH_II1456 esterase, putative.
       0.480
Daci_2659
KEGG: ajs:Ajs_1106 hypothetical protein.
  
    0.476
Daci_3745
PFAM: regulatory protein MarR; KEGG: rfr:Rfer_1513 transcriptional regulator, MarR family.
  
     0.415
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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