STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2672PFAM: Integrase catalytic region; KEGG: rme:Rmet_2991 integrase, catalytic region. (512 aa)    
Predicted Functional Partners:
queH
Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
       0.645
Daci_2671
KEGG: rme:Rmet_2990 transcriptional regulator, LysR family.
       0.645
Daci_3624
Transposase; KEGG: mlo:mlr6150 transposase.
 
    0.623
Daci_1748
KEGG: pol:Bpro_5204 integrase, catalytic region.
  
     0.603
Daci_3625
KEGG: bch:Bcen2424_3232 integrase, catalytic region.
 
   
 0.471
Daci_1750
KEGG: ajs:Ajs_3905 transposase IS3/IS911 family protein.
 
  
 0.464
Daci_2669
PFAM: methylenetetrahydrofolate reductase; KEGG: rme:Rmet_2988 methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
  
    0.459
Daci_1754
PFAM: Integrase catalytic region; KEGG: pfo:Pfl_2765 integrase, catalytic region.
 
   
 0.455
Daci_0954
PFAM: Integrase catalytic region; KEGG: ppf:Pput_3520 integrase, catalytic region.
 
    0.400
Daci_1567
PFAM: Integrase catalytic region; KEGG: ppf:Pput_3520 integrase, catalytic region.
 
    0.400
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.