STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2679PFAM: transposase Tn3 family protein; KEGG: ppd:Ppro_3845 transposase Tn3 family protein. (990 aa)    
Predicted Functional Partners:
Daci_2680
PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: ppd:Ppro_3846 resolvase, N-terminal domain.
 
   
 0.948
Daci_2096
PFAM: Resolvase domain; KEGG: bpd:BURPS668_2984 putative site-specific recombinases, DNA invertase Pin.
 
   
 0.758
Daci_2682
KEGG: maq:Maqu_1254 hypothetical protein.
 
     0.610
Daci_2685
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppd:Ppro_3851 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.530
Daci_2681
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ppd:Ppro_3847 RND efflux system, outer membrane lipoprotein, NodT family.
       0.494
Daci_2683
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppd:Ppro_3849 ABC transporter related.
       0.444
Daci_2684
PFAM: protein of unknown function DUF214; KEGG: ppd:Ppro_3850 protein of unknown function DUF214.
       0.444
Daci_2686
PFAM: regulatory protein TetR; KEGG: maq:Maqu_1250 transcriptional regulator, TetR family.
       0.444
Daci_2740
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rme:Rmet_3040 UBA/ThiF-type NAD/FAD binding fold.
  
     0.441
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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