Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2722KEGG: rme:Rmet_3025 hypothetical protein. (98 aa)    
Predicted Functional Partners:
Daci_2721
KEGG: rme:Rmet_3024 conserved hypothetical replication initiator and transcription repressor protein.
 
     0.930
Daci_2719
KEGG: rme:Rmet_3022 hypothetical protein.
 
     0.875
Daci_2717
KEGG: rme:Rmet_3020 putative conjugal transfer TRAF transmembrane protein.
 
     0.865
Daci_2718
KEGG: rme:Rmet_3021 hypothetical protein.
 
     0.865
Daci_2716
KEGG: pau:PA14_31070 hypothetical protein.
 
     0.849
Daci_0456
KEGG: aav:Aave_0688 hypothetical protein.
 
     0.810
Daci_0453
KEGG: rme:Rmet_1489 hypothetical protein.
 
     0.790
Daci_0454
KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein.
 
     0.790
Daci_0455
KEGG: rme:Rmet_1487 hypothetical protein.
 
     0.790
Daci_0439
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein.
 
   
 0.787
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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