Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2729PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_3028 transcriptional regulator, XRE family. (97 aa)    
Predicted Functional Partners:
Daci_2728
KEGG: rme:Rmet_3027 putative lipoprotein.
 
     0.710
Daci_2727
KEGG: rme:Rmet_3026 hypothetical protein.
 
    0.705
Daci_0459
KEGG: ajs:Ajs_2651 hypothetical protein.
 
    0.588
Daci_2689
KEGG: aav:Aave_0736 hypothetical protein.
  
     0.543
Daci_2660
PFAM: Putative ParB-like nuclease; KEGG: bte:BTH_I2525 hypothetical protein.
  
     0.503
Daci_0456
KEGG: aav:Aave_0688 hypothetical protein.
 
     0.493
Daci_4635
PFAM: TOBE domain protein; KEGG: aav:Aave_3040 TOBE domain protein.
  
     0.485
Daci_2719
KEGG: rme:Rmet_3022 hypothetical protein.
  
     0.463
Daci_0460
KEGG: rme:Rmet_1482 putative lipoprotein.
 
     0.460
Daci_0467
PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease.
  
     0.460
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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