Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2730PFAM: protein of unknown function DUF736; KEGG: rme:Rmet_3029 protein of unknown function DUF736. (104 aa)    
Predicted Functional Partners:
Daci_0439
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein.
 
     0.775
Daci_2700
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein.
 
     0.775
Daci_0434
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pau:PA14_30900 TrbJ-like protein.
 
     0.774
Daci_0454
KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein.
 
     0.772
Daci_2717
KEGG: rme:Rmet_3020 putative conjugal transfer TRAF transmembrane protein.
 
     0.772
Daci_2695
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pau:PA14_30900 TrbJ-like protein.
 
     0.771
Daci_2693
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bam:Bamb_2010 TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.770
Daci_0432
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: pap:PSPA7_3700 conjugal transfer protein TrbL.
 
     0.769
Daci_0453
KEGG: rme:Rmet_1489 hypothetical protein.
 
     0.769
Daci_2716
KEGG: pau:PA14_31070 hypothetical protein.
 
     0.769
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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