Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_2734PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_3034 protein of unknown function DUF932. (275 aa)    
Predicted Functional Partners:
Daci_2733
PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease.
 
    0.887
Daci_0467
PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease.
 
    0.753
Daci_2727
KEGG: rme:Rmet_3026 hypothetical protein.
  
    0.731
Daci_0459
KEGG: ajs:Ajs_2651 hypothetical protein.
  
    0.728
Daci_0456
KEGG: aav:Aave_0688 hypothetical protein.
  
     0.677
Daci_2719
KEGG: rme:Rmet_3022 hypothetical protein.
  
     0.666
Daci_2728
KEGG: rme:Rmet_3027 putative lipoprotein.
  
    0.609
Daci_0460
KEGG: rme:Rmet_1482 putative lipoprotein.
  
    0.594
Daci_2738
KEGG: rme:Rmet_3038 hypothetical protein.
  
    0.586
Daci_0470
KEGG: rme:Rmet_3038 hypothetical protein.
  
    0.578
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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