STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2740PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rme:Rmet_3040 UBA/ThiF-type NAD/FAD binding fold. (751 aa)    
Predicted Functional Partners:
Daci_2741
KEGG: rme:Rmet_3041 hypothetical protein.
 
     0.951
Daci_2739
Hypothetical protein; KEGG: rme:Rmet_3039 beta-lactamase-like protein.
 
     0.946
Daci_2742
KEGG: rme:Rmet_3042 hypothetical protein.
 
     0.742
Daci_4189
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: neu:NE0293 hypothetical protein.
  
     0.561
Daci_2743
KEGG: rme:Rmet_3043 hypothetical protein.
       0.548
Daci_1740
KEGG: mms:mma_3051 hypothetical protein.
 
     0.509
Daci_1743
KEGG: azo:azo0228 hypothetical protein.
  
     0.443
Daci_2679
PFAM: transposase Tn3 family protein; KEGG: ppd:Ppro_3845 transposase Tn3 family protein.
  
     0.441
Daci_2682
KEGG: maq:Maqu_1254 hypothetical protein.
 
     0.433
Daci_5722
KEGG: mms:mma_1045 hypothetical protein.
 
     0.432
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.