Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Daci_2741KEGG: rme:Rmet_3041 hypothetical protein. (397 aa)    
Predicted Functional Partners:
Daci_2740
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rme:Rmet_3040 UBA/ThiF-type NAD/FAD binding fold.
 
     0.950
Daci_2739
Hypothetical protein; KEGG: rme:Rmet_3039 beta-lactamase-like protein.
 
     0.948
Daci_2742
KEGG: rme:Rmet_3042 hypothetical protein.
 
     0.729
Daci_2743
KEGG: rme:Rmet_3043 hypothetical protein.
       0.607
Daci_4189
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: neu:NE0293 hypothetical protein.
  
     0.486
Daci_4170
KEGG: pla:Plav_3415 hypothetical protein.
  
     0.466
Daci_4168
KEGG: bxe:Bxe_A1196 hypothetical protein.
  
    0.464
Daci_4164
KEGG: ajs:Ajs_1279 putative secreted protein.
  
     0.456
Daci_4179
KEGG: ajs:Ajs_1256 hypothetical protein.
  
     0.436
Daci_4183
PFAM: protein of unknown function DUF1527; KEGG: xcv:XCV2363 putative secreted protein.
  
     0.432
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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