Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
Daci_2744PFAM: protein of unknown function DUF1016; KEGG: rme:Rmet_3044 protein of unknown function DUF1016. (378 aa)    
Predicted Functional Partners:
Daci_2745
PFAM: integrase family protein; KEGG: rme:Rmet_3045 phage integrase; Belongs to the 'phage' integrase family.
 
     0.856
Daci_2437
KEGG: eba:ebA2161 hypothetical protein.
  
     0.494
Daci_2746
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1066 uncharacterized protein UPF0114.
       0.453
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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