Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2762PFAM: regulatory protein MarR; KEGG: xcv:XCV0364 transcriptional regulator, MarR family. (184 aa)    
Predicted Functional Partners:
Daci_2761
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ppf:Pput_2404 acyl-CoA dehydrogenase domain protein.
 
     0.747
Daci_2760
PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_0918 major facilitator superfamily MFS_1.
     
 0.714
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.637
Daci_2759
PFAM: CoA-binding domain protein; KEGG: nar:Saro_0674 CoA-binding protein.
       0.481
Daci_3696
PFAM: regulatory protein MarR; KEGG: pol:Bpro_2197 transcriptional regulator, MarR family.
  
     0.464
Daci_5402
PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: aav:Aave_4468 transcriptional regulator, TrmB.
  
     0.460
Daci_4358
KEGG: pna:Pnap_1901 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.
  
    0.415
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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