STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2780KEGG: aav:Aave_1528 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Daci_2781
KEGG: rfr:Rfer_1936 hypothetical protein.
 
  
 0.860
Daci_2779
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ajs:Ajs_1088 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
  
 0.762
Daci_4952
KEGG: aav:Aave_2989 hypothetical protein.
  
     0.732
Daci_0413
KEGG: ajs:Ajs_0301 putative ATP synthase protein I.
  
     0.710
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
  
     0.708
Daci_0856
PFAM: protein of unknown function DUF1289; KEGG: vei:Veis_2838 protein of unknown function DUF1289.
  
     0.695
Daci_1458
KEGG: vei:Veis_4558 hypothetical protein.
  
     0.693
Daci_0875
PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family.
  
     0.677
Daci_5431
PFAM: outer membrane lipoprotein LolB; KEGG: aav:Aave_3608 putative lipoprotein.
  
     0.676
Daci_1123
KEGG: vei:Veis_0989 hypothetical protein.
  
     0.654
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.