STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2801KEGG: rfr:Rfer_1038 Asp/Glu racemase. (218 aa)    
Predicted Functional Partners:
Daci_2799
KEGG: mbb:BCG_0315A hypothetical protein, antitoxin.
       0.675
vapC-2
PIN domain protein family protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.675
Daci_2802
cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
       0.584
Daci_2805
PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3179 aminotransferase, class I and II.
 
     0.551
Daci_2803
TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pol:Bpro_2763 cob(II)yrinic acid a,c-diamide reductase.
       0.491
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.491
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
       0.491
Daci_1285
TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; KEGG: bur:Bcep18194_C6735 FAD dependent oxidoreductase.
 
     0.467
Daci_1052
KEGG: bbt:BBta_4849 hypothetical protein.
  
     0.463
Daci_2798
PFAM: extracellular solute-binding protein family 3; KEGG: azo:azo0442 putative glutamine-binding protein.
       0.441
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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