STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2812PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: bur:Bcep18194_B0473 NAD-dependent epimerase/dehydratase. (326 aa)    
Predicted Functional Partners:
Daci_2810
PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_4878 type III effector Hrp-dependent outers.
 
    0.945
Daci_2814
PFAM: class II aldolase/adducin family protein; KEGG: bxe:Bxe_B2170 putative L-fuculose phosphate aldolase.
 
 
 
 0.886
Daci_2811
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rfr:Rfer_0446 3-hydroxyisobutyrate dehydrogenase.
 
   
 0.843
Daci_2809
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: vei:Veis_2462 hydroxypyruvate isomerase; Belongs to the hyi family.
 
    0.794
Daci_5643
KEGG: ppf:Pput_1847 type III effector Hrp-dependent outer.
 
    0.675
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 0.651
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.648
Daci_1788
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2567 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    0.648
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.647
Daci_2813
PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B0475 major facilitator superfamily (MFS_1) transporter.
  
    0.646
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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