STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2822KEGG: rha:RHA1_ro05126 hypothetical protein; Belongs to the UPF0311 family. (162 aa)    
Predicted Functional Partners:
Daci_4537
PFAM: amidohydrolase 2; KEGG: pna:Pnap_0606 amidohydrolase 2.
 
  
 0.657
Daci_2823
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3983 uncharacterized protein UPF0065.
       0.620
Daci_2821
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pau:PA14_10980 hypothetical protein.
 
     0.604
Daci_4538
PFAM: Tannase and feruloyl esterase; KEGG: bam:Bamb_4911 feruloyl esterase.
 
     0.513
Daci_4386
PFAM: monooxygenase FAD-binding; KEGG: bra:BRADO0592 putative flavoprotein monooxygenase.
 
     0.498
Daci_0687
PFAM: ferredoxin; cytochrome P450; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5278 ferredoxin:cytochrome P450:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region.
  
 
 0.473
Daci_0287
TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: bch:Bcen2424_3505 hydroxymethylglutaryl-CoA reductase, degradative; Belongs to the HMG-CoA reductase family.
   
  
 0.436
Daci_5387
PFAM: NUDIX hydrolase; KEGG: aav:Aave_3467 NUDIX hydrolase.
   
  
 0.408
Daci_4358
KEGG: pna:Pnap_1901 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.
  
     0.407
Daci_3533
PFAM: Tannase and feruloyl esterase; KEGG: bra:BRADO4865 putative feruloyl esterase.
 
     0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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