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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2829PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3169 putative transcriptional regulator, GntR family. (398 aa)    
Predicted Functional Partners:
Daci_0593
PFAM: aminotransferase class I and II; KEGG: aav:Aave_4437 putative transcriptional regulator, GntR family.
  
  
 
0.911
Daci_5662
Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_B2576 putative aminotransferase.
  
  
 
0.909
Daci_2830
PFAM: SlyX family protein; KEGG: ajs:Ajs_3168 SlyX family protein.
       0.783
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
      0.509
Daci_2828
PFAM: conserved hypothetical protein; KEGG: reh:H16_B2308 probable extra-cytoplasmic solute receptor.
       0.486
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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